The flexible Bluebee platform can help you implement precisely the pipelines you need.

Data analysis pipelines

Bluebee offers off-the-shelf pipelines, flexible pipeline configuration, and an assisted migration of existing in-house pipelines.

Off-the-shelf pipelines

Start using preconfigured and validated pipelines on the Bluebee cloud platform right away.

Lift-over service

Make use of our services for assisted migration of your in-house pipeline onto the Bluebee platform.

The following pipelines are available and ready to use:

Whole Genome Sequencing, Bluebee reference pipeline

Bluebee’s Whole Genome Sequencing pipeline uses BWA-MEM and GATK core algorithms for genome alignment and variant calling.

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Exome Sequencing, Bluebee reference pipeline

Bluebee’s Exome Sequencing pipeline uses BWA-MEM and GATK core algorithms for exome alignment and variant calling.

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Structural Variants, Bluebee reference pipeline

A Bluebee reference pipeline to discover Structural Variants at single nucleotide resolution.

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Cancer, UMCU validated pipeline

A clinically validated pipeline to discover variants, somatic mutations and copy number variations in tumors.  Validated by UMCU, Utrecht, Netherlands.

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RNASeq, Bluebee reference pipeline

Reference pipeline for RNASeq read alignment and differential gene expression using Star.

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Bisulfite Sequencing, Bluebee reference pipeline

A Bluebee reference pipeline to determine cytosine methylation states

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RNASeq, CECAD validated pipeline

Validated pipeline for RNASeq read alignment and differential gene expression using Tophat. Validated by CECAD, Cologne, Germany.

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Annotation, Bluebee reference pipeline

The Bluebee Annotation Reference Pipeline is based on popular bioinformatic tools and databases.

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Dr. Peter Frommolt, Head of CECAD’s Bioinformatics Facility, Cologne, Germany

“The collaboration with Bluebee fits with our ambition to reduce the hurdles that still limit the usability of NGS technology. By making our pipelines and interpretation tools available on Bluebee, we considerably lower the barriers for access to our collaborators.”

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