Pipelines

The Bluebee platform is flexible, we can help you to implement any pipeline you have in mind.

Bluebee offers off-the-shelf pipelines, flexible pipeline configuration and a lift-over of assisted migration of existing in house pipelines.

Off-the-shelf pipelines

Start using preconfigured and validated pipelines on the Bluebee cloud platform right away.

Flexible configuration

Build custom pipelines or start from a reference pipeline and adjust to your needs.

Lift-over service

Make use of our services for assisted migration of your in-house pipeline onto the Bluebee platform.

The following pipelines are available and ready to use:

Cancer, UMCU validated pipeline

A clinically validated pipeline to discover variants, somatic mutations and copy number variations in tumors.  Validated by UMCU, Utrecht, Netherlands.

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Structural Variants, Bluebee reference pipeline

A Bluebee reference pipeline to discover Structural Variants at single nucleotide resolution.

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Whole Genome Sequencing, Bluebee reference pipeline

Bluebee’s Whole Genome Sequencing pipeline uses BWA-MEM and GATK core algorithms for genome alignment and variant calling.

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Exome Sequencing, Bluebee reference pipeline

Bluebee’s Exome Sequencing pipeline uses BWA-MEM and GATK core algorithms for exome alignment and variant calling.

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RNASeq, Bluebee reference pipeline

Reference pipeline for RNASeq read alignment and differential gene expression using Star.

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RNASeq, CECAD validated pipeline

Validated pipeline for RNASeq read alignment and differential gene expression using Tophat. Validated by CECAD, Cologne, Germany.

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